PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070804.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family LBD
Protein Properties Length: 263aa    MW: 29057 Da    PI: 7.3158
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070804.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.91.8e-294107199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C++dC+l+p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +PvyG+vg++ ++ +  +q+
  XP_011070804.1   4 SCNGCRVLRKGCSEDCTLRPCLqwiksPESQANATLFLAKFYGRAGLINLINAGPTHLRSETFRSLLYEACGRIINPVYGSVGLMCSGDWPRCQA 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelallke 99 
                     ++e++l+++
  XP_011070804.1  99 AVEAVLQGA 107
                     ***998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.9163109IPR004883Lateral organ boundaries, LOB
PfamPF031954.4E-244103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEDCT LRPCLQWIKS PESQANATLF LAKFYGRAGL INLINAGPTH  60
LRSETFRSLL YEACGRIINP VYGSVGLMCS GDWPRCQAAV EAVLQGAPLM KQVIGDDDYS  120
STPAQGQYPV PPLQGCDIRH LSKDSLAAVQ HVRTRNRFKR SKSQAESMAV KYLMGSEAKF  180
TITGWDCGDN HKDFGEELKR APSHDSFSVE TVEPTLANRD EQSIRGVKTE PQTTEIGLEL  240
TLSLNPIVQT FPNTVIQISD SEQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070804.10.0PREDICTED: LOB domain-containing protein 40-like
TrEMBLA0A022REY61e-123A0A022REY6_ERYGU; Uncharacterized protein
STRINGSolyc05g009320.2.18e-91(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.17e-73LOB domain-containing protein 41